Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs56960757 chr2:241537047 C/T 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs57023839 chr16:1772892 T/C 2.51E-11 170 25.67 19.3 4.52 KM Plot
PCPG rs57071566 chr16:89889327 T/G 0.000198 172 26.22 20.28 36.37 KM Plot
PCPG rs57137641 chr12:56741228 G/A 9.68E-8 177 25.17 29.13 9.98 KM Plot
PCPG rs57218552 chr14:74370600 G/C 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs57255862 chr2:236192482 C/T 3.73E-7 170 27.2 24.7 3.07 KM Plot
PCPG rs57279772 chr12:56698960 G/A 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs57298399 chr7:158659884 G/C 0 175 25.53 20.37 3.17 KM Plot
PCPG rs57317059 chr2:24309082 A/G 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs57337179 chr2:241539478 C/T 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs57343616 chr12:56623347 C/T 1.37E-7 174 25.08 32.6 0.8 KM Plot
PCPG rs57366408 chr2:19020144 T/A 7.32E-5 172 24.85 32.15 17.42 KM Plot
PCPG rs57367440 chr12:56745788 T/C 9.85E-8 177 25.35 27.33 9.98 KM Plot
PCPG rs57375947 chr13:37564741 C/CAT 0.00031 176 4.17 24.47 25.87 KM Plot
PCPG rs57383328 chr17:80504952 C/CA 5.49E-5 172 26.57 19.72 7.2 KM Plot